Fasta file download uniport

Click on “Create File” to generate and download “sequence.gb” and “sequence.fasta” files, respectively. N.B. The same can be done from the FASTA document

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To look-up a protein sequence and find the database identifiers associated with it (i.e. database entries having the same sequence) you can zcat | python uniprot2go.py GO:0070337 GO:0016021 > out.fasta extid, r.sequence) ) sys.stderr.write("Reported %s entries\n" % k) Of course, if you will run it multiple times, better download the dump and run it from local UniProt is a freely accessible database of protein sequence and functional information, many Data format, Custom flat file, FASTA, GFF, RDF, XML. Download URL, www.uniprot.org/downloads & for downloading complete data sets It is a high quality annotated and non-redundant protein sequence database, which brings together experimental results, Download - UniProt FTP sites. Click on “Create File” to generate and download “sequence.gb” and “sequence.fasta” files, respectively. N.B. The same can be done from the FASTA document Simply download fasta file with all sequences (or just a chosen subset) from https://www.uniprot.org/downloads, unpack the file if needed, I tried it with 5-10 protein sequences from the fasta file of the cell proteome (downloaded from uniport) but that doesn't seem to be useful

Uniseqs get unique seqs from a fasta file. Seq2OTU generating an OTU table according to Sequence identity. BLASTXFrame get the correct translation frame.

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